Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BAH41295.1 | BAH44755.1 | BBR47_03180 | BBR47_37780 | Hypothetical protein. | Hypothetical protein. | 0.474 |
BAH43646.1 | BAH44755.1 | BBR47_26690 | BBR47_37780 | Conserved hypothetical membrane protein. | Hypothetical protein. | 0.500 |
BAH44257.1 | BAH44755.1 | BBR47_32800 | BBR47_37780 | Hypothetical protein. | Hypothetical protein. | 0.587 |
BAH44755.1 | BAH41295.1 | BBR47_37780 | BBR47_03180 | Hypothetical protein. | Hypothetical protein. | 0.474 |
BAH44755.1 | BAH43646.1 | BBR47_37780 | BBR47_26690 | Hypothetical protein. | Conserved hypothetical membrane protein. | 0.500 |
BAH44755.1 | BAH44257.1 | BBR47_37780 | BBR47_32800 | Hypothetical protein. | Hypothetical protein. | 0.587 |
BAH44755.1 | BAH44756.1 | BBR47_37780 | BBR47_37790 | Hypothetical protein. | Conserved hypothetical protein. | 0.590 |
BAH44755.1 | BAH44757.1 | BBR47_37780 | BBR47_37800 | Hypothetical protein. | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.517 |
BAH44755.1 | lspA | BBR47_37780 | BBR47_37810 | Hypothetical protein. | Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.523 |
BAH44755.1 | pyrR | BBR47_37780 | BBR47_37770 | Hypothetical protein. | Pyrimidine operon regulatory protein/uracil phosphoribosyltransferase; Regulates transcriptional attenuation of the pyrimidine nucleotide (pyr) operon by binding in a uridine-dependent manner to specific sites on pyr mRNA. This disrupts an antiterminator hairpin in the RNA and favors formation of a downstream transcription terminator, leading to a reduced expression of downstream genes. Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily. | 0.452 |
BAH44756.1 | BAH44755.1 | BBR47_37790 | BBR47_37780 | Conserved hypothetical protein. | Hypothetical protein. | 0.590 |
BAH44756.1 | BAH44757.1 | BBR47_37790 | BBR47_37800 | Conserved hypothetical protein. | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.739 |
BAH44756.1 | lspA | BBR47_37790 | BBR47_37810 | Conserved hypothetical protein. | Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.602 |
BAH44757.1 | BAH44755.1 | BBR47_37800 | BBR47_37780 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Hypothetical protein. | 0.517 |
BAH44757.1 | BAH44756.1 | BBR47_37800 | BBR47_37790 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Conserved hypothetical protein. | 0.739 |
BAH44757.1 | lspA | BBR47_37800 | BBR47_37810 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.892 |
BAH44757.1 | pyrR | BBR47_37800 | BBR47_37770 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Pyrimidine operon regulatory protein/uracil phosphoribosyltransferase; Regulates transcriptional attenuation of the pyrimidine nucleotide (pyr) operon by binding in a uridine-dependent manner to specific sites on pyr mRNA. This disrupts an antiterminator hairpin in the RNA and favors formation of a downstream transcription terminator, leading to a reduced expression of downstream genes. Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily. | 0.544 |
lspA | BAH44755.1 | BBR47_37810 | BBR47_37780 | Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | Hypothetical protein. | 0.523 |
lspA | BAH44756.1 | BBR47_37810 | BBR47_37790 | Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | Conserved hypothetical protein. | 0.602 |
lspA | BAH44757.1 | BBR47_37810 | BBR47_37800 | Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.892 |
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