STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR89384.1CRP/FNR family transcriptional regulator, anaerobic regulatory protein. (227 aa)    
Predicted Functional Partners:
nifJ
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.882
SFR89396.1
Hypothetical protein.
 
  
 0.816
SFS20709.1
Putative two-component system response regulator.
  
 0.744
SFS21844.1
Putative two-component system response regulator.
  
 0.744
SFR89408.1
4Fe-4S dicluster domain-containing protein.
    
 0.712
SFS17246.1
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
   
 0.697
SFS17251.1
Diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.697
SFS20613.1
Diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.697
SFS20644.1
Signal transduction histidine kinase.
  
 0.690
SFS22740.1
Signal transduction histidine kinase.
  
 0.690
Your Current Organism:
Clostridium citroniae
NCBI taxonomy Id: 358743
Other names: CCUG 52203, Clostridium citroniae Warren et al. 2007, DSM 19261, [. citroniae, [Clostridium] citroniae, strain RMA 16102
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