STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR89504.1D-sedoheptulose 7-phosphate isomerase. (213 aa)    
Predicted Functional Partners:
SFR89494.1
D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase.
 
 0.999
SFR89483.1
D-glycero-alpha-D-manno-heptose-7-phosphate kinase.
 
 0.998
SFR89516.1
Glycosyl transferase family 2.
 
 
 
 0.846
SFR89471.1
D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase.
 
  
 0.833
SFR89458.1
Glycosyltransferase, GT2 family.
 
 0.818
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.731
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
   
 
 0.675
rfbF
Glucose-1-phosphate cytidylyltransferase.
 
  
 0.648
SFR89528.1
Hypothetical protein.
       0.639
fliN
Flagellar motor switch protein FliN/FliY.
    
 
 0.636
Your Current Organism:
Clostridium citroniae
NCBI taxonomy Id: 358743
Other names: CCUG 52203, Clostridium citroniae Warren et al. 2007, DSM 19261, [. citroniae, [Clostridium] citroniae, strain RMA 16102
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