Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
Experiments
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[Homology]
Score
DF19_00530Nitrogen fixation protein NifU; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)    
Predicted Functional Partners:
DF19_00535
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
sufC
Cysteine desulfurase; Part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
DF19_25885
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.997
DF19_03790
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.996
DF19_25940
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.996
DF19_31970
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.996
DF19_00550
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.995
DF19_00525
Metal-sulfur cluster biosynthetic enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.994
DF19_00555
Fe-S cluster assembly protein SufB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.993
DF19_00135
Class V aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.988
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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