STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DF19_01705RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)    
Predicted Functional Partners:
DF19_01710
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.894
DF19_39100
RNA polymerase sigma factor SigM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.835
DF19_16485
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.812
DF19_01715
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.782
DF19_17450
DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.764
DF19_17445
DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.761
DF19_21660
RNA polymerase sigma factor SigL; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.747
DF19_14320
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.742
DF19_01700
Adenine glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.737
DF19_05315
DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.728
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.