Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
DF19_02400Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (768 aa)    
Predicted Functional Partners:
DF19_01690
Cell division protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.918
DF19_09960
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.905
DF19_38900
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.892
DF19_00185
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.891
DF19_24450
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.888
DF19_01665
Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.874
DF19_01930
D-alanyl-D-alanine carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.864
DF19_38895
Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.851
DF19_24455
Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.834
DF19_09965
Rod shape-determining protein RodA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.827
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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