Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DF19_03045Elongation factor Tu; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)    
Predicted Functional Partners:
DF19_17460
30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.992
DF19_18085
Elongation factor Ts; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.989
DF19_17465
30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.986
DF19_17500
30S ribosomal protein S10; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.983
DF19_17520
50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.983
DF19_17415
50S ribosomal protein L11; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.982
DF19_17530
50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.980
DF19_17645
30S ribosomal protein S11; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.979
DF19_17505
50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.978
DF19_17525
30S ribosomal protein S19; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.978
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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