Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DF19_03250ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)    
Predicted Functional Partners:
DF19_03260
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.863
DF19_08175
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.766
DF19_40520
Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.748
DF19_28075
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.737
DF19_25035
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.722
DF19_36220
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.688
DF19_39350
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.672
DF19_17155
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.645
DF19_21945
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.617
DF19_23805
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.617
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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