Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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Databases
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[Homology]
Score
DF19_03365Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)    
Predicted Functional Partners:
DF19_03345
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.935
DF19_03370
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.935
DF19_03355
Polyketide beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.832
DF19_27990
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.819
DF19_03350
beta-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.812
DF19_03360
Curamycin polyketide synthase acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.794
DF19_27965
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.794
DF19_23530
Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.574
DF19_03340
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.552
DF19_27980
Polyketide beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.531
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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