Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DF19_03375Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)    
Predicted Functional Partners:
DF19_04550
PrpF, AcnD-accessory; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.740
DF19_03380
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.728
DF19_36600
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.709
DF19_10390
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.671
DF19_12380
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.669
DF19_06170
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.665
DF19_28900
Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.618
DF19_26270
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.592
DF19_04490
Metapyrocatechase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.555
DF19_29370
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.528
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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