Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
DF19_03445Phosphate acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (700 aa)    
Predicted Functional Partners:
DF19_03440
Acetate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
DF19_27895
Acetate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
DF19_03090
Phosphoketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.984
DF19_17230
2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.984
DF19_38755
Malate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.964
DF19_26920
Malate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.959
DF19_32600
Malate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.959
DF19_23295
Fumarate hydratase; Catalyzes the formation of malate from fumerate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.938
DF19_13905
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.933
DF19_21860
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.922
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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