STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DF19_03465IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)    
Predicted Functional Partners:
DF19_05600
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.895
DF19_28860
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.773
DF19_33440
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.754
DF19_07460
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.681
DF19_32505
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.624
DF19_18400
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.558
DF19_03470
Gluconate permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.522
DF19_05595
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.515
gudD
Glucarate dehydratase; Catalyzes the formation of 5-keto-4-deoxy-D-glucarate from glucarate; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.479
DF19_39290
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.467
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.