Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DF19_04435Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)    
Predicted Functional Partners:
DF19_36965
N-acetylglucosamine-6-phosphate deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.640
DF19_19575
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.549
DF19_04445
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.524
DF19_04430
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.501
DF19_40325
Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.494
DF19_03140
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.461
DF19_19150
Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.460
DF19_18240
Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.415
DF19_04440
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.414
DF19_03945
3-phosphoglycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.400
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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