Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DF19_04575FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)    
Predicted Functional Partners:
DF19_12380
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.737
DF19_06170
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.733
DF19_29330
Dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.699
DF19_06770
NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.687
DF19_23295
Fumarate hydratase; Catalyzes the formation of malate from fumerate; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.673
DF19_28900
Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.640
DF19_38845
Hydroxyisourate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.611
DF19_04580
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.602
DF19_13905
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.601
DF19_23850
Kynureninase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.597
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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