STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DF19_06910Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)    
Predicted Functional Partners:
DF19_06900
Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.769
DF19_06905
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.769
katE
Hydroperoxidase; Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.718
DF19_11220
Ferritin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.631
DF19_10370
Ferritin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.565
DF19_06920
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.559
DF19_06925
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.559
DF19_06930
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.559
DF19_06935
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.559
DF19_06940
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.559
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.