STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DF19_06970DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)    
Predicted Functional Partners:
DF19_01165
DNA polymerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.937
DF19_21680
DNA lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.864
DF19_18275
formamidopyrimidine-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
0.837
DF19_34480
formamidopyrimidine-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
0.837
DF19_11235
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.776
DF19_02345
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.731
DF19_01115
dephospho-CoA kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.699
DF19_00745
Excinuclease ABC subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.667
DF19_40510
5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.601
DF19_02085
3'-5' exonuclease; Similar to DNA polymerase I; lacks 5'-3' exonuclease domain; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.594
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.