Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DF19_07005Superoxide dismutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)    
Predicted Functional Partners:
DF19_15525
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.982
DF19_17645
30S ribosomal protein S11; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.964
DF19_41160
30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.957
DF19_17460
30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.956
DF19_17550
30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.956
DF19_18175
30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.955
DF19_17680
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.954
DF19_39175
30S ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.953
DF19_17590
30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.952
DF19_17500
30S ribosomal protein S10; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.950
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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