Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DF19_08070Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)    
Predicted Functional Partners:
DF19_39155
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.815
DF19_21905
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.792
DF19_13905
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.790
DF19_33805
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.781
DF19_22630
Phosphomannomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.746
DF19_02715
Mannose-1-phosphate guanyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.706
thrS
threonine--tRNA ligase; Catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.696
DF19_14715
threonyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.696
DF19_22945
Dolichol-phosphate mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.691
DF19_17685
Phosphoglucosamine mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.685
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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