Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DF19_09220Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)    
Predicted Functional Partners:
DF19_09215
Sodium:solute symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.851
DF19_09205
Acetolactate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.814
DF19_38205
PucR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.766
DF19_09210
Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.760
DF19_07905
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.698
DF19_07825
Phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.534
DF19_20160
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.489
DF19_40175
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.460
DF19_06010
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.441
DF19_13110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.428
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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