Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DF19_09255Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)    
Predicted Functional Partners:
DF19_09260
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.933
DF19_09265
Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.682
DF19_05975
4-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.647
DF19_38285
3-oxoadipate enol-lactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.647
katE
Hydroperoxidase; Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.620
DF19_36925
DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.538
DF19_23850
Kynureninase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.533
DF19_05985
Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.519
DF19_28305
HNH endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.504
DF19_03115
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.501
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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