Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DF19_09855Secretion protein snm4; Derived by automated computational analysis using gene prediction method: Protein Homology. (445 aa)    
Predicted Functional Partners:
DF19_09865
Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.946
DF19_09850
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.927
DF19_09870
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.872
DF19_09815
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.831
DF19_41175
Secretion protein EccC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.831
DF19_09825
Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.800
DF19_36190
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.794
DF19_06955
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.791
DF19_09030
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.791
DF19_09860
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.773
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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