Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
DF19_17455Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (173 aa)    
Predicted Functional Partners:
DF19_17450
DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.714
DF19_17460
30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.704
DF19_17465
30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.704
DF19_05295
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.695
DF19_05300
Orotidine 5'-phosphate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.695
fusA
Elongation factor G; EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.678
DF19_17445
DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.663
DF19_41995
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.652
DF19_34635
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.648
DF19_17475
Elongation factor Tu; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.631
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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