Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DF19_18655Sugar dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)    
Predicted Functional Partners:
DF19_13905
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.971
DF19_04240
Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.963
DF19_12070
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.962
DF19_21860
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.944
DF19_21880
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.944
DF19_13890
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.942
DF19_21905
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.926
DF19_20525
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.922
DF19_20520
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.919
DF19_20530
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.919
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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