Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
DF19_19710phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)    
Predicted Functional Partners:
ectC
L-ectoine synthase; N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.798
DF19_10390
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.685
DF19_14235
phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.663
DF19_33525
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.552
DF19_05245
X-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.517
DF19_10410
Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.517
DF19_35635
Peptidase M24; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.517
DF19_39460
Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.517
DF19_04240
Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.484
DF19_12070
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.478
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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