Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
DF19_19715Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)    
Predicted Functional Partners:
DF19_16455
Acetoin utilization protein AcuC; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.551
DF19_19720
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.514
DF19_03350
beta-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.511
DF19_03355
Polyketide beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.511
DF19_15320
FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.511
DF19_23525
beta-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.511
DF19_23530
Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.511
DF19_27980
Polyketide beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.511
DF19_27985
beta-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.511
DF19_06820
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.453
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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