Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
DF19_19745Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (66 aa)    
Predicted Functional Partners:
DF19_19750
Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.832
DF19_17230
2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.806
DF19_41515
acetyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.730
DF19_19755
Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.712
DF19_03445
Phosphate acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.705
DF19_27890
Phosphate acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.705
DF19_19760
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.655
DF19_38010
Protein meaA; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.637
DF19_31740
methylmalonyl-CoA mutase; MDM; functions in conversion of succinate to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.602
DF19_21915
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.554
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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