STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DF19_20145Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)    
Predicted Functional Partners:
DF19_20140
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.827
DF19_20175
Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.771
DF19_20185
Acetoacetate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.746
DF19_25450
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.547
DF19_20195
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.544
DF19_20205
Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.519
DF19_20200
Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.509
DF19_22980
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.477
DF19_29495
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.448
DF19_32610
RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.438
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.