STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DF19_20185Acetoacetate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)    
Predicted Functional Partners:
DF19_20195
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.946
DF19_20175
Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.930
DF19_20170
5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.884
DF19_20200
Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.868
DF19_20190
Ferredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.849
DF19_20205
Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.817
DF19_20165
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.759
DF19_20180
Betaine-aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.749
DF19_20145
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.746
DF19_04500
succinyl-CoA:3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.716
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.