Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DF19_22015ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)    
Predicted Functional Partners:
DF19_22020
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.967
DF19_22030
Von Willebrand factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.960
DF19_22010
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.943
DF19_22040
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.726
DF19_00045
Magnesium chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.637
DF19_22045
succinyl-CoA synthetase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.590
DF19_17975
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.542
DF19_11720
Ferrochelatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.497
DF19_00055
Cobyrinic acid ac-diamide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.490
DF19_16600
Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.414
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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