Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DF19_26565Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (363 aa)    
Predicted Functional Partners:
DF19_26545
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.744
DF19_26555
Molybdopterin biosynthesis protein MoeE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.702
DF19_42605
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.658
DF19_26550
NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.651
DF19_26540
NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.620
DF19_00730
Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.582
DF19_32895
Transcription factor WhiB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.522
DF19_26790
WhiB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.482
DF19_02750
MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.476
DF19_05890
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.470
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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