Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dppDDppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)    
Predicted Functional Partners:
AQS62095.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.966
AQS65181.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.966
AQS64963.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.965
AQS64867.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.952
AQS64437.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.951
AQS63725.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.937
AQS64767.1
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.924
AQS60894.1
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.913
AQS63590.1
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.903
AQS63665.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.903
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, LMG:150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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