STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS62281.1Cytochrome c-type biogenesis protein; required for the transfer of heme to apocytochrome c; Derived by automated computational analysis using gene prediction method: Protein Homology. (663 aa)    
Predicted Functional Partners:
AQS62280.1
Cytochrome c-type biogenesis protein CcmH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.997
CcmI
C-type cytochrome biogenesis protein CcmI; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.982
CcmE
Cytochrome c biogenesis protein CcmE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.977
AQS64654.1
Sodium:dicarboxylate symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.778
AQS65325.1
SARP family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.679
AQS63261.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.540
CcoP
Cytochrome-c oxidase, cbb3-type subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.517
AQS62284.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.515
AQS62279.1
Serine peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.497
AQS63831.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.451
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, LMG:150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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