Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQS62289.1Peptidase P60; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)    
Predicted Functional Partners:
AQS62290.1
Beta tubulin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.977
AQS62291.1
Glycoside hydrolase family 24; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.977
AQS62288.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.959
AQS62292.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.952
AQS62301.1
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.839
AQS62295.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.835
AQS63262.1
Phage major tail protein, TP901-1 family; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.833
AQS60967.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.822
AQS62299.1
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.802
AQS63265.1
Primosomal replication protein N; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.802
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, LMG:150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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