Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQS63277.1Organic hydroperoxide resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)    
Predicted Functional Partners:
AQS62402.1
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.991
AQS60929.1
DNA starvation/stationary phase protection protein Dps; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.660
SoxR
Redox-sensitive transcriptional activator SoxR; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.657
AQS62925.1
DUF1508 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.583
AQS62400.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.579
AQS62454.1
CsbD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.572
AQS61123.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.557
betA
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
      
 0.557
AQS63514.1
GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.557
AQS62401.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.533
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, LMG:150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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