Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AQS62442.1Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (504 aa)    
Predicted Functional Partners:
AQS61319.1
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.923
AQS62279.1
Serine peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.920
AQS64104.1
GlcNAc transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.800
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
 
 
   0.781
rpsF
Hypothetical protein; Binds together with S18 to 16S ribosomal RNA.
   
 
 0.775
AQS62937.1
Pilus assembly protein TadD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.762
AQS63369.1
Metalloprotease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.732
AQS65179.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.732
AQS65387.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.732
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.720
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, LMG:150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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