Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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Textmining
[Homology]
Score
AQS62940.1Peptidase P60; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)    
Predicted Functional Partners:
AQS62941.1
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.806
AQS64645.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.737
AQS63367.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.664
AQS62442.1
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.656
AQS64104.1
GlcNAc transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.611
AQS62686.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.562
AQS64650.1
TIGR02302 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.547
AQS62585.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.510
AQS63247.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.496
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
  
 
 0.470
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, LMG:150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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