Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQS63856.1Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)    
Predicted Functional Partners:
NirK
Nitrite reductase, copper-containing; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.888
AQS63857.1
Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.820
TagF
Type VI secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.797
betC
Choline-sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.720
AQS63851.1
Protein norD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.649
AQS63850.1
Nitric-oxide reductase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.647
AQS63849.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.634
AQS63854.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.607
AQS61111.1
Pseudoazurin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.591
AQS65345.1
Pseudoazurin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.583
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, LMG:150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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