STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS63978.1Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (482 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
   
 
 0.914
AQS60907.1
Biliverdin-producing heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
AQS63270.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.629
AQS63412.1
Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.568
AQS64167.1
Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.568
AQS63977.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.529
CcoP
Cytochrome-c oxidase, cbb3-type subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.473
AQS63975.1
Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.445
AQS61893.1
Copper resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.442
ArsC
Arsenate reductase (glutaredoxin); Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.421
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, LMG:150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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