Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQS64564.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1818 aa)    
Predicted Functional Partners:
PbpC
Penicillin-binding protein 1C; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.981
AQS64562.1
Peptidase S16; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.665
TagF
Type VI secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.613
AQS63861.1
AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.606
AQS64442.1
AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.606
AQS65309.1
AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.606
AQS64999.1
AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.606
AQS64563.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0434 family.
       0.534
TssL
Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.469
AQS64325.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.421
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, LMG:150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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