STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS65011.1Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)    
Predicted Functional Partners:
AQS65367.1
Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.991
AQS65010.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.978
AQS62221.1
Metal-binding protein ZinT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.942
AQS63761.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.928
AQS63760.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.927
AQS63759.1
Manganese/iron transporter ATP-binding protein; With SitACD is involved in the transport of manganese and iron; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.910
znuB
Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.875
znuC
Zinc ABC transporter ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
  
  
 0.715
AQS65009.1
4-hydroxytetrahydrobiopterin dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.669
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.595
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, LMG:150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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