Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQS65377.1Polygalacturonase; Derived by automated computational analysis using gene prediction method: Protein Homology. (517 aa)    
Predicted Functional Partners:
AQS65049.1
Di-trans,poly-cis-decaprenylcistransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.994
AQS65048.1
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.887
AQS65046.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.845
AQS65045.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.832
AQS65044.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.818
AQS65040.1
5-dehydro-4-deoxy-D-glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.786
AQS63635.1
Glycoside hydrolase 105 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.729
AQS62301.1
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.707
AQS62297.1
Head-tail adaptor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.701
AQS64416.1
Glucoronyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.653
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, LMG:150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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