CN09_00035 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_00035

Chemotaxis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (199 aa)

Predicted Functional Partners:

CN09_15420

0.979

CN09_05120

0.856

CN09_27770

0.851

CN09_15425

0.850

cheB

0.805

CN09_15430

0.796

CN09_00030

0.682

CN09_00015

0.633

cheD

0.607

CN09_11800

0.593

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_00015	CN09_00030	CN09_00015	CN09_00030	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Potassium transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.965
CN09_00015	CN09_00035	CN09_00015	CN09_00035	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Chemotaxis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.633
CN09_00030	CN09_00015	CN09_00030	CN09_00015	Potassium transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.965
CN09_00030	CN09_00035	CN09_00030	CN09_00035	Potassium transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Chemotaxis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.682
CN09_00035	CN09_00015	CN09_00035	CN09_00015	Chemotaxis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.633
CN09_00035	CN09_00030	CN09_00035	CN09_00030	Chemotaxis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Potassium transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.682
CN09_00035	CN09_05120	CN09_00035	CN09_05120	Chemotaxis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method- Protein Homology	0.856
CN09_00035	CN09_11800	CN09_00035	CN09_11800	Chemotaxis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Chemotaxis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.593
CN09_00035	CN09_15420	CN09_00035	CN09_15420	Chemotaxis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.979
CN09_00035	CN09_15425	CN09_00035	CN09_15425	Chemotaxis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method- Protein Homology	0.850
CN09_00035	CN09_15430	CN09_00035	CN09_15430	Chemotaxis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP	0.796
CN09_00035	CN09_27770	CN09_00035	CN09_27770	Chemotaxis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method- Protein Homology	0.851
CN09_00035	cheB	CN09_00035	CN09_15435	Chemotaxis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Chemotaxis response regulator protein-glutamate methylesterase; Involved in the modulation of the chemotaxis system; catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR	0.805
CN09_00035	cheD	CN09_00035	CN09_15445	Chemotaxis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Probable chemoreceptor glutamine deamidase CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis	0.607
CN09_05120	CN09_00035	CN09_05120	CN09_00035	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method- Protein Homology	Chemotaxis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.856
CN09_05120	CN09_11800	CN09_05120	CN09_11800	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method- Protein Homology	Chemotaxis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.768
CN09_05120	CN09_15420	CN09_05120	CN09_15420	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method- Protein Homology	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_05120	CN09_15430	CN09_05120	CN09_15430	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method- Protein Homology	Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP	0.975
CN09_05120	cheB	CN09_05120	CN09_15435	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method- Protein Homology	Chemotaxis response regulator protein-glutamate methylesterase; Involved in the modulation of the chemotaxis system; catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR	0.970
CN09_05120	cheD	CN09_05120	CN09_15445	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method- Protein Homology	Probable chemoreceptor glutamine deamidase CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis	0.874

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About