STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_00045Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology (594 aa)    
Predicted Functional Partners:
CN09_00040
Aminomethyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GcvT family
 
   
 0.944
CN09_00020
Dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.913
CN09_00025
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.898
CN09_00010
Aminomethyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GcvT family
 
   
 0.887
CN09_00030
Potassium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.870
CN09_22360
Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.868
CN09_00015
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.849
CN09_33945
Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamine synthetase family
 
   
 0.639
CN09_33930
Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.626
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP
     
 0.585
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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