STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_00060CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (86 aa)    
Predicted Functional Partners:
CN09_00065
Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 
 0.967
CN09_00050
Ribonuclease VapC; Toxic component of a toxin-antitoxin (TA) module. An RNase
       0.573
CN09_00055
Rv0623-like transcription factor; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.573
CN09_23440
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.562
CN09_32060
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.523
CN09_34360
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.499
CN09_23445
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.487
CN09_23450
Myo-inositol catabolism protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.462
CN09_02795
Choline kinase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.451
CN09_19105
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.426
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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