STRINGSTRING
CN09_00270 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_00270" - Flagellar motor protein MotB in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_00270Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ompA family (494 aa)    
Predicted Functional Partners:
CN09_00275
NADH-ubiquinone oxidoreductase subunit E; Derived by automated computational analysis using gene prediction method- Protein Homology (364 aa)
 
          0.882
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology (1225 aa)
         
  0.876
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (82 aa)
   
      0.566
CN09_05765
Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (614 aa)
 
 
 
  0.561
CN09_16910
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (606 aa)
 
     
  0.557
CN09_00265
Isoprenylcysteine carboxyl methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (222 aa)
 
          0.554
CN09_25440
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (230 aa)
 
 
  0.523
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel (206 aa)
   
 
  0.522
CN09_09920
Multidrug ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (436 aa)
 
 
  0.507
rplI
50S ribosomal protein L9; Binds to the 23S rRNA (193 aa)
   
 
  0.486
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (6%) [HD]