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CN09_00505 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_00505" - ABC transporter in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_00505ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (328 aa)    
Predicted Functional Partners:
CN09_30585
Regulatory protein; Derived by automated computational analysis using gene prediction method- Protein Homology (786 aa)
   
        0.999
CN09_00495
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (307 aa)
        0.994
CN09_00500
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (259 aa)
 
        0.976
kynU
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively (415 aa)
              0.777
CN09_33125
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (395 aa)
              0.774
CN09_11820
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (471 aa)
   
        0.706
CN09_00510
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (242 aa)
 
          0.671
CN09_00485
Esterase; Derived by automated computational analysis using gene prediction method- Protein Homology (276 aa)
 
          0.658
gpsA
Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Derived by automated computational analysis using gene prediction method- Protein Homology (329 aa)
              0.652
CN09_06490
Phosphohistidine phosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology (163 aa)
              0.612
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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