CN09_00520 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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white nodes:
second shell of interactors

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

CN09_00520

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (67 aa)

Predicted Functional Partners:

CN09_00515

0.776

CN09_22625

0.661

CN09_32200

0.627

CN09_24500

0.566

CN09_19075

0.526

CN09_17275

0.516

CN09_19300

0.503

CN09_02600

0.475

CN09_33010

0.440

CN09_19220

0.434

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

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Coexpression

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node1	node2	node1 annotation	node2 annotation	score
CN09_00515	CN09_00520	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.776
CN09_00515	CN09_19300	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.532
CN09_00515	CN09_22625	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.561
CN09_00515	CN09_32200	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.550
CN09_00520	CN09_00515	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.776
CN09_00520	CN09_02600	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Dienelactone hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.475
CN09_00520	CN09_17275	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.516
CN09_00520	CN09_19075	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Endonuclease DDE; Derived by automated computational analysis using gene prediction method- Protein Homology	0.526
CN09_00520	CN09_19220	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Type IV secretion system protein VirB9; Derived by automated computational analysis using gene prediction method- Protein Homology	0.434
CN09_00520	CN09_19300	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.503
CN09_00520	CN09_22625	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.661
CN09_00520	CN09_24500	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Endonuclease DDE; Derived by automated computational analysis using gene prediction method- Protein Homology	0.566
CN09_00520	CN09_32200	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.627
CN09_00520	CN09_33010	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.440
CN09_02600	CN09_00520	Dienelactone hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.475
CN09_02600	CN09_17275	Dienelactone hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.758
CN09_17275	CN09_00520	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.516
CN09_17275	CN09_02600	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Dienelactone hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.758
CN09_19075	CN09_00520	Endonuclease DDE; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.526
CN09_19075	CN09_19300	Endonuclease DDE; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.573