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CN09_00620 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_00620" - Carbohydrate-binding protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_00620Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (894 aa)    
Predicted Functional Partners:
CN09_00615
Glycoside hydrolase family 37; Derived by automated computational analysis using gene prediction method- Protein Homology (751 aa)
 
        0.964
CN09_00585
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (162 aa)
 
     
  0.723
CN09_00610
Spermidine/putrescine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (346 aa)
 
          0.717
CN09_21990
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (356 aa)
 
     
  0.701
CN09_00590
Isochorismatase; Derived by automated computational analysis using gene prediction method- Protein Homology (198 aa)
 
          0.695
CN09_00595
Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (349 aa)
 
     
  0.616
CN09_00580
Beta-glucosidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glycosyl hydrolase 3 family (780 aa)
 
     
  0.587
CN09_00605
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
 
          0.566
CN09_20355
Xylose isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology (317 aa)
 
          0.554
CN09_25995
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (161 aa)
   
          0.541
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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