CN09_00830 protein (Agrobacterium rhizogenes)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

CN09_00830

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)

Predicted Functional Partners:

CN09_18560

0.999

CN09_00835

0.990

CN09_00825

0.603

CN09_00615

0.523

CN09_00620

0.489

guaA

0.454

CN09_03180

0.419

topA

0.407

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_00615	CN09_00620	CN09_00615	CN09_00620	Glycoside hydrolase family 37; Derived by automated computational analysis using gene prediction method- Protein Homology	Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.964
CN09_00615	CN09_00830	CN09_00615	CN09_00830	Glycoside hydrolase family 37; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.523
CN09_00615	CN09_00835	CN09_00615	CN09_00835	Glycoside hydrolase family 37; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.463
CN09_00615	CN09_03180	CN09_00615	CN09_03180	Glycoside hydrolase family 37; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.512
CN09_00620	CN09_00615	CN09_00620	CN09_00615	Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycoside hydrolase family 37; Derived by automated computational analysis using gene prediction method- Protein Homology	0.964
CN09_00620	CN09_00830	CN09_00620	CN09_00830	Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.489
CN09_00620	CN09_00835	CN09_00620	CN09_00835	Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.437
CN09_00620	CN09_03180	CN09_00620	CN09_03180	Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.485
CN09_00825	CN09_00830	CN09_00825	CN09_00830	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.603
CN09_00825	CN09_00835	CN09_00825	CN09_00835	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.603
CN09_00830	CN09_00615	CN09_00830	CN09_00615	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycoside hydrolase family 37; Derived by automated computational analysis using gene prediction method- Protein Homology	0.523
CN09_00830	CN09_00620	CN09_00830	CN09_00620	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.489
CN09_00830	CN09_00825	CN09_00830	CN09_00825	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.603
CN09_00830	CN09_00835	CN09_00830	CN09_00835	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.990
CN09_00830	CN09_03180	CN09_00830	CN09_03180	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.419
CN09_00830	CN09_18560	CN09_00830	CN09_18560	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_00830	guaA	CN09_00830	CN09_14055	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP	0.454
CN09_00830	topA	CN09_00830	CN09_09825	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...]	0.407
CN09_00835	CN09_00615	CN09_00835	CN09_00615	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycoside hydrolase family 37; Derived by automated computational analysis using gene prediction method- Protein Homology	0.463
CN09_00835	CN09_00620	CN09_00835	CN09_00620	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.437

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