STRINGSTRING
CN09_01000 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_01000" - Nitrate ABC transporter substrate-binding protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01000Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (344 aa)    
Predicted Functional Partners:
CN09_01010
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (278 aa)
 
     
  0.988
CN09_01005
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (270 aa)
 
   
  0.988
CN09_01015
Invasion protein; Derived by automated computational analysis using gene prediction method- Protein Homology (452 aa)
 
          0.975
CN09_01030
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (307 aa)
 
     
  0.889
CN09_01025
Crotonase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family (258 aa)
 
          0.872
CN09_01020
CoA-transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (385 aa)
 
          0.840
CN09_02880
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (288 aa)
 
     
  0.711
CN09_18415
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (270 aa)
 
     
  0.708
CN09_31940
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the iron/ascorbate-dependent oxidoreductase family (321 aa)
 
          0.694
CN09_03170
Nitrate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (377 aa)
 
     
  0.689
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (15%) [HD]